Brown, 30, has signed a three-year deal at the JJB stadium to become Chris Hutchings' eighth signing since taking the manager's job this summer.
The fee is believed to be in the region of £3 million as new Cottagers boss Lawrie Sanchez seeks to recoup some of the £20 million spent on new players so far this summer.
The former Manchester City, Sheffield United and Tottenham midfielder became a fans' favourite at Fulham but his stay, while influential in keeping them up, was marred by disciplinary problems for his often robust tackling.
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But the return to fitness and decision to stay in West London of Papa Bouba Diop and the £4 million purchase of Steven Davis from Aston Villa have convinced Brown, who is from and has spent most of his career in the north of England.
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