The shoulder problem had also forced the 31-year-old to withdraw from her second-round match in St Petersburg, Russia last month.
"We will miss Maria this year and hope to see her back at Indian Wells next year!" the tournament said on Twitter.
'You can still be jealous!' - Dimitrov fires back at weird Sharapova question
Sharapova's withdrawal allowed German Mona Barthel to secure a spot in the Indian Wells singles draw. The tournament will take place from March 4-17.
Watch Dimitrov respond to weird question about ex Sharapova
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